There are multiple example data sets included in phyloseq. Many are from published investigations and include documentation with a summary and references, as well as some example code representing some aspect of analysis available in phyloseq.
##  '1.16.2'
##  '2.1.0'
ggplot2 package theme set. See the ggplot2 online documentation for further help.
To load example data into the working environment, use the
data(GlobalPatterns) data(esophagus) data(enterotype) data(soilrep)
In the package index, go to the names beginning with “data-” to see the documentation of currently available example datasets.
Try for example
to access the documentation for the so-called “GlobalPatterns” dataset.
You can also try the examples included with the example data documentation (as well as examples for functions/methods) using the standard
example command in R – in this case the examples for the
## ## entrty> data(enterotype) ## ## entrty> ig <- make_network(enterotype, "samples", max.dist=0.3) ## ## entrty> plot_network(ig, enterotype, color="SeqTech", shape="Enterotype", line_weight=0.3, label=NULL)
## Warning: attributes are not identical across measure variables; they will ## be dropped