Waste Not, Want Not Supplemental Files

This repo hosts the supplemental source/output files corresponding to Protocol 1 of the following article.

McMurdie and Holmes (2014) Waste Not, Want Not: Why Rarefying Microbiome Data is Inadmissible. PLoS Computational Biology

(in press)

Please make sure to cite the above article if you make use of these supplemental files.

Source Code Index

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The R Markdown Source Code

For more advanced users interested in seeing and/or modifying the R markdown source code from which these reproducible, web browser-friendly output files were created.






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Phyloseq Extensions

For brief reproducible examples of related extensions for the phyloseq package, see the phyloseq extensions front page.